JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNL1_chr6_30536381_30561489	0/0	t0014	4978	2	0	0	2	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0015	4978	2	1	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0016	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0017	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0018	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0019	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0020	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0021	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0022	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0023	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0024	4978	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0025	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0026	4978	1	0	0	0	0	1	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0027	4978	1	0	0	1	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0028	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0029	4978	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0030	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0031	4978	1	1	0	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	t0032	4978	1	0	0	0	0	1	copy fasta	GNL1	chr6	30536381	30561489
GNL2_chr1_37561816_37600937	1/1	t0001	155	372	81	66	159	18	46	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	t0002	155	2	0	2	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	t0003	155	1	0	0	1	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	t0004	155	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL3L_chrX_54525219_54572289	0/0	t0001	6935	57	10	11	25	5	6	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0002	6937	43	0	5	35	0	3	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0003	6936	24	9	2	10	2	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0004	6935	22	19	3	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0005	6936	8	0	3	5	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0006	6936	8	0	4	0	0	4	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0007	6938	5	0	1	3	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0008	6935	4	0	4	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0009	6938	4	0	0	4	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0010	6938	4	0	3	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0011	6937	3	0	1	1	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0012	6937	3	0	0	2	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0013	6936	3	0	0	3	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0014	6934	3	1	0	2	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0015	6937	3	1	1	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0016	6936	2	0	0	2	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0017	6933	2	0	2	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0018	6933	2	2	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0019	6934	2	0	0	1	1	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0020	6936	2	0	0	2	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0021	6936	2	1	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/1	t0022	6936	2	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0023	6936	2	2	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0024	6935	2	1	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0025	6937	2	1	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0026	6958	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0027	6937	1	0	0	0	0	1	copy fasta	GNL3L	chrX	54525219	54572289