JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNL3L_chrX_54525219_54572289	0/0	t0028	6935	1	0	0	0	1	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0029	6934	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0030	6935	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0031	6936	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0032	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0033	6940	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0034	6963	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0035	6935	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0036	6937	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0037	6937	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	1/0	t0038	6936	1	0	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0039	6924	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0040	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0041	6938	1	0	0	0	1	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0042	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0043	6963	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0044	6937	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0045	6949	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0046	6951	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0047	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0048	6958	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0049	6959	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0050	6959	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0051	6935	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0052	6935	1	0	0	0	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0053	6937	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0054	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0055	6938	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0056	6939	1	0	0	0	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0057	6936	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0058	6935	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0059	6934	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0060	6935	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0061	6935	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0062	6939	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0063	6937	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0064	6939	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0065	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0066	6937	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0067	6939	1	0	0	0	0	1	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0068	6935	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0069	6937	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0070	6924	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0071	6934	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0072	6936	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0073	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0074	6936	1	0	0	0	1	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0075	6936	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0076	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0077	6936	1	0	0	0	0	1	copy fasta	GNL3L	chrX	54525219	54572289