JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNL3L_chrX_54525219_54572289	0/0	t0078	6937	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0079	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0080	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0081	6936	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0082	6935	1	0	1	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0083	6932	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0084	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0085	6936	1	1	0	0	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0086	6936	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0087	6939	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	t0088	6935	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3_chr3_52681032_52699497	1/1	t0001	284	189	37	34	77	10	29	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	t0002	285	162	31	30	87	5	9	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	t0003	284	42	26	9	6	1	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	t0004	284	1	0	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNLY_chr2_85689358_85703852	0/1	t0001	340	184	49	33	79	4	18	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	1/0	t0002	340	181	27	37	81	8	27	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0003	340	24	14	7	1	2	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0004	340	3	2	1	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0005	340	3	0	0	2	0	1	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0006	340	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0007	340	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	t0008	340	1	0	0	1	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNMT_chr6_42955754_42968880	1/1	t0001	189	387	99	74	160	10	42	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	t0002	189	1	1	0	0	0	0	copy fasta	GNMT	chr6	42955754	42968880
GNPAT_chr1_231236212_231282973	0/0	t0001	599	223	54	35	104	8	22	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	1/1	t0002	599	128	27	21	60	6	12	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	t0003	599	3	3	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	t0004	599	2	2	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	t0005	599	2	0	0	2	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	t0006	599	1	0	0	1	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	t0007	599	1	0	0	1	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPDA1_chr5_141995671_142018027	0/0	t0001	1388	291	23	49	179	4	36	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0002	1388	46	29	12	0	1	4	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	1/0	t0003	1398	30	8	10	1	5	5	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0004	1399	22	9	6	0	4	3	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0005	1388	7	7	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0006	1399	6	5	1	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0007	1388	5	0	0	5	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0008	1388	2	2	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0009	1388	2	1	1	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0010	1399	2	0	2	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0011	1399	2	2	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0012	1388	1	0	1	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0013	1388	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0014	1388	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0015	1388	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0016	1388	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0017	1399	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	t0018	1388	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027