JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNPDA1_chr5_141995671_142018027	0/0	t0019	1399	1	1	0	0	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA2_chr4_44696795_44731556	0/0	t0001	1405	144	29	36	60	5	14	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0002	1406	101	23	13	57	2	6	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/1	t0003	1405	82	16	12	41	2	10	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0004	1406	41	1	9	31	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0005	1401	8	6	2	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0006	1405	8	8	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0007	1406	5	0	0	5	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	1/0	t0008	1405	4	3	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0009	1405	3	0	2	0	0	1	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0010	1405	3	1	0	0	1	1	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0011	1405	2	0	0	2	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0012	1405	2	2	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0013	1405	2	2	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0014	1405	1	1	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0015	1405	1	0	1	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0016	1405	1	1	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0017	1405	1	0	1	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0018	1405	1	1	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0019	1406	1	1	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPDA2_chr4_44696795_44731556	0/0	t0020	1405	1	1	0	0	0	0	copy fasta	GNPDA2	chr4	44696795	44731556
GNPNAT1_chr14_52770193_52796607	1/1	t0001	3313	164	40	46	54	7	15	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0002	3313	113	19	17	59	4	14	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0003	3313	57	9	7	36	0	5	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0004	3313	16	0	0	16	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0005	3311	12	0	0	10	0	2	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0006	3318	5	5	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0007	3313	5	0	4	0	1	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0008	3313	4	0	0	4	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0009	3313	4	2	2	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0010	3313	1	1	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0011	3313	1	0	0	1	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0012	3318	1	0	1	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0013	3318	1	1	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0014	3313	1	0	1	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0015	3313	1	1	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0016	3323	1	0	0	1	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0017	3313	1	1	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0018	3313	1	0	0	1	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	t0019	3313	1	1	0	0	0	0	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPTAB_chr12_101740499_101835959	0/1	t0001	1947	117	41	19	44	4	8	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	1/0	t0002	1950	72	13	18	28	4	8	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0003	1949	53	0	11	40	1	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0004	1947	46	2	0	41	0	3	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0005	1947	39	1	7	28	1	2	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0006	1947	16	2	4	1	2	7	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0007	1947	11	10	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0008	1948	9	9	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0009	1947	5	4	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0010	1947	4	4	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959