JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNPTAB_chr12_101740499_101835959	0/0	t0011	1950	4	0	0	4	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0012	1981	2	0	0	2	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0013	1947	2	2	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0014	1935	1	0	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0015	1947	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0016	1947	1	0	0	0	0	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0017	1947	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0018	1947	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0019	1950	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0020	1950	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0021	1947	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0022	1947	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0023	1947	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0024	1947	1	1	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	t0025	1947	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTG_chr16_1346931_1369113	1/0	t0001	1058	327	72	63	133	17	41	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/1	t0002	1058	27	6	7	8	1	4	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0003	1058	6	5	1	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0004	1058	3	3	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0005	1058	3	2	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0006	1058	2	2	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0007	36	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0008	1058	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0009	1058	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0010	1058	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0011	1058	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0012	1026	1	0	1	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0013	1058	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0014	1058	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0015	1058	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	t0016	1058	1	0	0	0	0	1	copy fasta	GNPTG	chr16	1346931	1369113
GNRH1_chr8_25414258_25429261	1/1	t0001	223	396	90	66	180	14	44	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	t0002	223	2	0	2	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH2_chr20_3038622_3050747	1/1	t0001	63	376	97	67	160	15	35	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	t0002	63	70	1	5	46	3	15	copy fasta	GNRH2	chr20	3038622	3050747
GNRHR_chr4_67732118_67759388	1/1	t0001	3416	203	44	39	94	7	17	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0002	3416	61	18	11	21	6	5	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0003	3416	46	4	11	20	4	7	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0004	3416	21	0	7	14	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0005	3416	13	7	3	0	1	2	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0006	3416	12	10	0	0	0	2	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0007	3415	9	0	0	9	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0008	3416	3	3	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0009	3416	2	1	1	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0010	3416	2	2	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0011	3416	1	0	1	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0012	3416	1	0	1	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0013	3416	1	0	0	0	0	1	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0014	3416	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0015	3416	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388