JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GNRHR_chr4_67732118_67759388	0/0	t0016	3416	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0017	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0018	3416	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0019	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0020	3416	1	0	1	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0021	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0022	3416	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0023	3416	1	0	1	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0024	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0025	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	t0026	3416	1	0	0	1	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNS_chr12_64708449_64764406	0/1	t0001	3423	152	26	21	80	6	18	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	1/0	t0002	3423	75	3	24	33	5	9	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0003	3423	54	3	11	22	3	15	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0004	3423	21	19	2	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0005	3426	10	10	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0006	3423	8	8	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0007	3423	6	6	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0008	3423	4	1	3	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0009	3423	3	3	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0010	3423	3	3	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0011	3425	3	3	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0012	3423	2	0	0	2	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0013	3423	2	2	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0014	3423	2	2	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0015	3423	1	1	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0016	3423	1	1	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0017	3423	1	0	1	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0018	3423	1	0	0	1	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0019	3423	1	0	1	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0020	3423	1	0	1	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	t0021	3423	1	1	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GOLGA1_chr9_124873275_124946083	0/1	t0001	2574	153	19	15	101	4	13	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0002	2572	105	26	30	32	4	13	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0003	2574	52	12	9	19	6	6	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0004	2574	19	0	6	11	0	2	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0005	2574	8	8	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0006	2575	6	5	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	1/0	t0007	2574	5	3	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0008	2574	4	0	0	4	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0009	2575	4	3	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0010	2572	4	0	0	4	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0011	2574	3	3	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0012	2574	2	2	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0013	2574	2	2	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0014	2574	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0015	2574	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0016	2574	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0017	2574	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0018	2572	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083