JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA1_chr9_124873275_124946083	0/0	t0019	2572	1	0	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	t0020	2574	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA2_chr9_128250829_128281007	1/1	t0001	1270	151	23	26	73	7	20	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0002	1270	61	14	6	26	4	11	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0003	1271	57	1	9	41	0	6	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0004	1271	55	25	0	26	1	3	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0005	1271	26	0	2	24	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0006	1272	20	17	3	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0007	1271	4	4	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0008	1271	3	1	2	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0009	1272	2	0	0	0	0	2	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0010	1272	2	0	0	2	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0011	1270	2	0	2	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0012	1270	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0013	1270	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0014	1270	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0015	1270	1	0	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	t0016	1270	1	0	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA3_chr12_132763914_132833869	0/0	t0001	4434	66	10	11	42	0	3	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0002	4442	57	9	16	18	1	13	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/1	t0003	4442	22	3	6	4	4	4	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0004	4441	18	1	1	10	0	6	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0005	4439	13	1	4	3	2	3	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0006	4441	10	8	0	1	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0007	4433	9	0	0	9	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0008	4433	8	0	1	4	2	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0009	4437	7	7	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0010	4435	5	1	1	3	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0011	4442	4	0	0	3	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0012	4443	4	2	1	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0013	4434	4	0	0	4	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0014	4441	3	3	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0015	4441	2	0	0	2	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0016	4442	2	0	0	2	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0017	4440	2	2	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0018	4441	2	2	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0019	4394	2	1	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0020	4442	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0021	4442	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0022	4432	2	0	0	2	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0023	4440	2	0	2	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0024	4434	2	0	0	1	1	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0025	4435	2	0	1	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0026	4438	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0027	4439	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0028	4440	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0029	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0030	4440	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0031	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0032	4442	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869