JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA3_chr12_132763914_132833869	0/0	t0033	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0034	4443	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0035	4438	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0036	4434	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0037	4442	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0038	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0039	4436	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0040	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0041	4441	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0042	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0043	4442	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0044	4442	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0045	4442	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0046	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0047	4441	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0048	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0049	4441	1	0	0	0	1	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0050	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0051	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0052	4442	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0053	4441	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0054	4443	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0055	4442	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0056	4441	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0057	4442	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0058	4442	1	0	0	0	1	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0059	4443	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0060	4444	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0061	4443	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0062	4437	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0063	4440	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0064	4442	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0065	4441	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0066	4434	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0067	4437	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0068	4434	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0069	4434	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0070	4436	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0071	4434	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0072	4434	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0073	4435	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0074	4436	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0075	4438	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0076	4439	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	1/0	t0077	4442	1	0	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0078	4442	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0079	4439	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0080	4443	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	t0081	4427	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA4_chr3_37238271_37371879	1/1	t0001	1114	159	52	35	42	5	23	copy fasta	GOLGA4	chr3	37238271	37371879