JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA4_chr3_37238271_37371879	0/0	t0002	1114	79	18	20	34	2	5	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0003	1114	8	0	1	6	1	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0004	1114	7	4	3	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0005	1113	6	5	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0006	1114	5	5	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0007	1114	3	3	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0008	1127	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0009	1114	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0010	1114	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0011	1114	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	t0012	1114	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA5_chr14_92789305_92844947	0/0	t0001	685	308	68	64	132	10	34	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	1/1	t0002	684	70	6	8	40	4	10	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0003	685	2	0	2	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0004	685	2	2	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0005	685	2	2	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0006	684	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0007	684	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0008	685	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0009	685	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	t0010	685	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA6A_chr15_74064857_74087550	1/0	t0001	1095	126	36	22	44	11	12	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	t0002	1095	4	4	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	t0003	1095	3	0	1	0	2	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	t0004	1095	2	0	1	0	1	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	t0005	1095	1	0	1	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	t0006	1095	1	0	1	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6B_chr15_72649697_72674599	0/0	t0001	3299	128	21	35	42	5	25	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0002	3299	62	1	8	49	1	3	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0003	3299	53	26	7	18	2	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0004	3299	28	6	0	21	0	1	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0005	3299	25	21	4	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0006	3299	10	9	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0007	3299	5	0	0	5	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0008	3299	3	0	0	3	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0009	3297	3	3	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0010	3299	2	2	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0011	3299	2	0	1	0	0	1	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	1/0	t0012	3299	1	0	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0013	3299	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0014	3299	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0015	3299	1	0	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0016	3299	1	0	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0017	3299	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0018	3299	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0019	3299	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0020	3299	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0021	3299	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0022	3299	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	t0023	3374	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599