JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6C_chr15_75253334_75278455	0/1	t0001	3522	63	18	10	28	4	2	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	1/0	t0002	3522	42	4	4	32	1	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0003	3525	34	5	7	19	1	2	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0004	3522	10	1	0	9	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0005	3522	6	0	3	3	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0006	3522	5	0	1	2	1	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0007	3435	3	0	0	3	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0008	3522	3	0	1	0	0	2	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0009	3525	3	0	1	2	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0010	451	2	0	0	0	0	2	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0011	3522	2	2	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0012	266	2	0	0	0	1	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0013	3522	2	2	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0014	3525	2	1	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0015	3525	2	0	0	2	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0016	3522	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0017	3522	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0018	3522	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0019	3522	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0020	2523	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0021	3522	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0022	3522	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0023	3522	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0024	3522	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0025	3522	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0026	3525	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0027	3525	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0028	3525	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0029	3525	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0030	3525	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0031	3525	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0032	3525	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0033	3525	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	t0034	3525	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6D_chr15_75277835_75300530	1/0	t0001	1097	194	32	30	99	8	24	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0002	1094	9	0	5	4	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0003	1095	8	0	4	1	1	2	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0004	1092	7	7	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0005	1097	3	0	0	2	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/1	t0006	1097	2	0	0	0	1	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0007	1097	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0008	1097	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0009	1094	1	0	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0010	1092	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0011	1095	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0012	1117	1	0	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0013	1097	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0014	1097	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0015	1097	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	t0016	1095	1	0	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530