Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCG8_chr2_43833971_43887988	0/0	t0041	5160	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0042	5161	2	0	1	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0043	5159	2	0	2	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/1	t0044	5159	2	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0045	5159	2	0	0	1	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0046	5154	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0047	5154	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0048	5165	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0049	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0050	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0051	5160	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0052	5159	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0053	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0054	5161	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0055	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0056	5160	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0057	5162	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0058	5163	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0059	5158	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0060	5160	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0061	5159	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0062	5159	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0063	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0064	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0065	5162	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0066	5154	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0067	5162	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0068	5163	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0069	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0070	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0071	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0072	5164	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0073	5160	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0074	5161	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0075	5155	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0076	5163	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0077	5163	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0078	5156	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0079	5160	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0080	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0081	5162	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0082	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0083	5159	1	0	0	0	1	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0084	5160	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0085	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0086	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0087	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0088	5162	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0089	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0090	5159	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988