Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALPK2_chr18_58476247_58634091	0/0	t0022	925	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0023	925	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0024	925	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	t0025	925	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK3_chr15_84812356_84878479	0/1	t0001	5121	80	16	8	43	1	11	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0002	5121	47	8	2	33	0	4	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0003	5123	44	1	17	22	0	4	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	1/0	t0004	5121	39	5	15	4	2	12	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0005	5121	32	9	7	15	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0006	5121	27	5	7	15	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0007	5121	12	8	1	3	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0008	5121	9	9	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0009	5121	6	6	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0010	5121	6	6	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0011	5121	5	2	3	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0012	5121	5	5	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0013	5121	2	2	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0014	5121	2	0	0	0	1	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0015	5121	2	1	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0016	5121	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0017	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0018	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0019	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0020	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0021	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0022	5123	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0023	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0024	5123	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0025	5121	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0026	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0027	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0028	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0029	5123	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0030	5121	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0031	5121	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0032	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0033	5121	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0034	5121	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0035	5121	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0036	5121	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	t0037	5121	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPL_chr1_21504423_21583410	0/0	t0001	962	96	0	17	65	3	11	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0002	962	77	15	13	26	6	17	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0003	962	56	10	9	34	1	2	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0004	962	44	24	11	8	0	1	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/1	t0005	962	36	13	12	1	3	6	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0006	962	22	0	4	16	1	1	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0007	962	12	10	2	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	1/0	t0008	962	7	5	1	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0009	961	5	1	2	0	2	0	copy fasta	ALPL	chr1	21504423	21583410