JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6L10_chr15_82334993_82354475	0/0	t0001	2881	84	4	24	48	4	4	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0002	2883	60	11	11	22	6	10	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0003	2945	57	19	4	27	4	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/1	t0004	2884	13	3	6	0	2	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0005	2945	7	6	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0006	2885	6	6	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0007	2885	6	0	3	3	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0008	2885	6	3	2	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0009	2884	5	0	3	0	0	2	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0010	2906	5	5	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0011	2944	4	4	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0012	2864	4	4	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0013	2883	3	0	0	0	0	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0014	2881	3	0	0	3	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0015	2884	2	0	0	2	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0016	2885	2	2	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0017	2945	2	0	0	0	0	2	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0018	2884	2	0	2	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0019	2884	2	1	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0020	2883	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0021	2881	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0022	2944	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0023	2884	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0024	2883	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0025	2883	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0026	2885	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0027	2885	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0028	2885	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0029	2885	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0030	2885	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0031	2885	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0032	2945	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0033	2945	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0034	2945	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0035	2945	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0036	2881	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0037	2881	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0038	2884	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0039	2884	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0040	2884	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0041	2884	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0042	2884	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0043	2880	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0044	2880	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0045	2908	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0046	2882	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	t0047	2912	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L1_chr15_23122066_23141822	0/0	t0001	1816	118	37	23	33	4	21	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0002	1816	20	1	7	10	0	2	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0003	1816	18	8	6	2	0	2	copy fasta	GOLGA6L1	chr15	23122066	23141822