JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6L1_chr15_23122066_23141822	0/0	t0004	1816	6	0	1	2	0	3	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0005	1816	5	0	0	5	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0006	1816	5	5	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0007	1816	3	2	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0008	1816	3	2	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0009	1816	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0010	1816	3	2	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0011	1816	2	1	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0012	1816	2	0	0	0	2	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0013	1816	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0014	1816	2	0	0	0	2	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0015	1816	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0016	1816	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0017	1816	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0018	1816	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0019	1816	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0020	1816	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0021	1816	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0022	1816	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0023	1816	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0024	1816	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	t0025	1816	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L22_chr15_22453903_22474226	1/1	t0001	1837	159	6	37	96	3	15	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0002	1837	45	0	4	35	3	3	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0003	1837	7	5	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0004	1837	5	5	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0005	1837	2	0	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0006	1837	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0007	1848	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0008	1837	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0009	1837	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0010	1837	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0011	1837	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0012	1837	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	t0013	1465	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L24_chr15_28342851_28363084	0/0	t0001	1806	114	6	24	47	12	25	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0002	1806	46	0	3	41	0	2	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0003	1806	12	0	8	2	1	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0004	1806	9	0	1	1	0	7	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0005	1805	6	0	1	3	1	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0006	1806	2	2	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0007	1807	2	0	0	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0008	1805	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0009	1807	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0010	1806	1	0	0	0	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0011	1806	1	0	0	0	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0012	1805	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0013	1806	1	0	0	1	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0014	1806	1	1	0	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	t0015	1806	1	0	1	0	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084