JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6L4_chr15_84230773_84250358	0/0	t0008	2829	8	7	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0009	2829	6	1	1	3	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0010	2829	6	6	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0011	2799	5	4	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0012	2829	4	0	0	4	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0013	2829	3	2	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0014	2829	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0015	2829	3	1	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0016	2829	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0017	2799	2	1	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0018	2799	2	1	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0019	2829	2	0	0	1	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0020	2829	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0021	2829	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0022	2829	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0023	2829	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0024	2829	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0025	2799	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0026	2799	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0027	2799	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0028	2799	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0029	2829	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0030	2829	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0031	2829	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0032	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0033	2829	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0034	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0035	2829	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0036	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0037	2829	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0038	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0039	2829	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0040	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0041	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0042	2859	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0043	2857	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	t0044	2829	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L6_chr15_20526856_20546800	0/0	t0001	1839	59	3	8	46	0	2	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	1/1	t0002	1839	46	6	4	30	1	3	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0003	1840	39	0	2	35	1	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0004	1839	17	7	3	0	0	7	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0005	1839	15	10	3	1	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0006	1841	9	2	7	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0007	1839	8	0	5	0	2	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0008	1839	3	0	1	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0009	1839	2	2	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0010	1840	2	0	0	0	0	2	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0011	1839	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0012	1840	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0013	1839	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800