JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6L6_chr15_20526856_20546800	0/0	t0014	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0015	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0016	1839	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0017	1839	1	0	0	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0018	1839	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0019	1839	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0020	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0021	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0022	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0023	1839	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	t0024	1839	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L7_chr15_28836832_28853644	1/1	t0001	499	236	27	49	116	13	29	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0002	498	92	45	13	30	0	4	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0003	498	45	6	9	20	2	8	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0004	500	16	1	11	3	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0005	498	14	4	2	6	1	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0006	499	6	3	1	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0007	498	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0008	499	2	0	0	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0009	499	2	0	0	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0010	499	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0011	499	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0012	498	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0013	500	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0014	497	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0015	499	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	t0016	499	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L9_chr15_82424816_82444153	0/0	t0001	3007	158	3	35	106	4	10	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0002	3007	72	16	6	42	3	5	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0003	3015	64	0	5	38	2	19	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/1	t0004	3007	23	7	10	0	3	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0005	3014	9	9	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0006	3007	8	7	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0007	3019	6	5	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0008	3007	6	0	0	3	1	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0009	3007	6	6	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0010	3007	6	4	2	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0011	3007	6	0	0	5	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0012	3015	5	0	3	0	2	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0013	3048	5	0	3	0	0	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0014	3010	5	1	1	2	1	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0015	3015	4	0	0	4	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0016	3012	4	1	3	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0017	3007	4	4	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0018	3007	4	4	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0019	3010	4	4	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0020	3015	3	0	1	0	2	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0021	3015	3	0	0	3	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0022	3007	3	2	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0023	3007	3	3	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153