JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA6L9_chr15_82424816_82444153	0/0	t0024	3007	3	0	0	3	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0025	3000	3	0	3	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0026	3014	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0027	2991	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0028	3013	2	0	0	1	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0029	3007	2	0	0	2	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0030	3007	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0031	3010	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0032	3015	1	0	0	0	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0033	3015	1	0	0	0	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0034	3015	1	0	0	0	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0035	3014	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0036	3014	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0037	3060	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0038	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0039	3007	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0040	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0041	3007	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0042	3007	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0043	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0044	3007	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0045	3007	1	0	0	0	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0046	3007	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0047	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0048	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0049	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0050	3007	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0051	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0052	3007	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0053	3007	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0054	3007	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0055	3007	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0056	3010	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	t0057	3010	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA7B_chr10_97844843_97876578	0/1	t0001	6340	116	14	21	62	3	15	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	1/0	t0002	6340	85	25	23	26	5	5	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0003	6334	31	3	0	23	0	5	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0004	6342	25	3	14	3	3	2	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0005	6334	6	6	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0006	6335	6	6	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0007	6342	5	3	1	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0008	6340	5	0	1	0	4	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0009	6346	5	1	0	4	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0010	6340	4	4	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0011	6334	4	4	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0012	6341	3	3	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0013	6341	3	1	0	2	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0014	6342	3	3	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0015	6340	2	2	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0016	6340	2	2	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578