JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA7B_chr10_97844843_97876578	0/0	t0017	6340	2	2	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0018	6340	2	2	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0019	6338	2	2	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0020	6342	1	0	0	0	1	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0021	6340	1	0	1	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0022	6340	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0023	6342	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0024	6340	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0025	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0026	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0027	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0028	6334	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0029	6335	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0030	6340	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0031	6340	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0032	6340	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0033	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0034	6340	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0035	6340	1	0	1	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0036	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0037	6340	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0038	6340	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0039	6335	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0040	6334	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0041	6338	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0042	6340	1	0	0	0	0	1	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0043	6346	1	0	0	1	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7B_chr10_97844843_97876578	0/0	t0044	6340	1	1	0	0	0	0	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7_chr8_41485582_41515980	0/0	t0001	1686	164	30	22	83	10	19	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	1/0	t0002	1686	53	6	5	38	1	2	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0003	1686	38	14	15	0	4	5	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/1	t0004	1686	21	10	9	0	1	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0005	1686	18	0	10	8	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0006	1686	13	13	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0007	1686	8	4	2	0	1	1	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0008	1686	7	0	1	0	1	5	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0009	1686	6	0	6	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0010	1686	4	4	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0011	1686	4	0	0	4	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0012	1686	2	0	2	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0013	1686	2	2	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0014	1676	1	1	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0015	1686	1	0	0	0	0	1	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0016	1686	1	0	0	1	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0017	1686	1	1	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0018	1686	1	0	0	1	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0019	1686	1	1	0	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0020	1686	1	0	1	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0021	1686	1	0	0	0	0	1	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	t0022	1686	1	0	1	0	0	0	copy fasta	GOLGA7	chr8	41485582	41515980