JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA7_chr8_41485582_41515980	0/0	t0023	1686	1	0	0	1	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA8A_chr15_34374068_34442808	0/0	t0001	4017	11	1	1	8	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0002	3760	10	0	1	6	1	2	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0003	3794	9	0	3	3	0	3	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0004	3777	9	0	4	5	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0005	4000	8	1	1	5	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0006	3966	8	0	3	4	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0007	3983	7	1	3	1	1	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0008	4051	6	0	0	5	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0009	3932	6	0	3	3	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0010	3949	5	0	2	2	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0011	4034	4	1	2	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0012	3760	4	0	0	4	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0013	4085	3	0	0	1	2	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0014	4068	3	0	0	2	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0015	4017	3	1	2	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0016	3983	3	1	1	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0017	3966	3	1	1	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0018	3966	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0019	3949	3	1	1	0	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0020	3949	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0021	3932	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0022	3915	3	1	0	0	0	2	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0023	3898	3	1	0	0	1	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0024	3811	3	0	0	1	0	2	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0025	3983	3	0	0	3	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0026	3966	3	0	1	2	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0027	4017	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0028	4000	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0029	4000	2	0	0	0	2	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0030	3915	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0031	3777	2	0	0	2	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0032	3760	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0033	4034	2	0	0	1	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0034	4017	2	0	0	1	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0035	4000	2	0	0	1	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0036	3983	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0037	3949	2	0	1	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0038	3932	2	0	1	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0039	3932	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0040	3915	2	0	0	1	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0041	4017	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0042	4000	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0043	3939	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0044	4046	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0045	4153	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0046	4119	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0047	4102	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0048	4102	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0049	4085	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808