JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8A_chr15_34374068_34442808	0/0	t0050	4068	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0051	4068	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0052	4068	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0053	4068	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0054	4068	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0055	4051	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0056	4051	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0057	4051	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0058	4034	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0059	4034	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0060	4034	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0061	4034	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0062	4034	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0063	4034	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0064	4034	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0065	4017	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0066	4017	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0067	4000	1	0	0	0	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0068	4000	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0069	4000	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0070	4000	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0071	3983	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0072	3983	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0073	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0074	3983	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0075	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0076	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0077	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0078	3966	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0079	3966	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0080	3966	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0081	3966	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	1/0	t0082	3966	1	0	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0083	3966	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0084	3949	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0085	3949	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0086	3949	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0087	3949	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0088	3949	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0089	3949	1	0	0	0	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0090	3976	1	0	0	0	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0091	3932	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0092	3932	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0093	3932	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0094	3915	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0095	3898	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0096	3898	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0097	3881	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0098	4035	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0099	3845	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808