JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8A_chr15_34374068_34442808	0/0	t0100	3828	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0101	3794	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0102	3760	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0103	3760	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0104	3743	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0105	5367	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0106	4034	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0107	4017	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0108	4017	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0109	4017	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0110	4000	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0111	4000	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0112	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0113	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0114	3983	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0115	3966	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0116	3966	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0117	3966	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0118	3966	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0119	3949	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0120	3932	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0121	3896	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0122	3932	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0123	3932	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0124	3915	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0125	3915	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0126	3898	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0127	3881	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	t0128	3919	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8B_chr15_34520095_34588651	0/1	t0001	3796	92	15	15	51	2	8	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0002	3813	38	2	7	24	0	5	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0003	3813	13	0	7	3	1	2	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0004	3813	7	7	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0005	3813	7	7	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0006	3813	5	5	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0007	3813	4	4	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0008	3813	4	4	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0009	3813	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0010	3813	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0011	3813	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0012	3813	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0013	3813	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0014	3813	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0015	3813	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0016	3889	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0017	3813	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0018	3813	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0019	3813	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0020	3813	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0021	3813	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651