Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALPL_chr1_21504423_21583410	0/0	t0010	962	4	4	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0011	962	2	1	1	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0012	962	2	2	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0013	962	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0014	962	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0015	962	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0016	962	1	0	1	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0017	962	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0018	962	1	0	1	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	t0019	962	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPP_chr2_232373751_232387889	1/0	t0001	1147	325	65	61	143	14	41	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0002	1147	55	6	3	40	2	4	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0003	1147	9	9	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0004	1147	7	2	0	5	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0005	1147	5	5	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0006	1147	2	0	0	2	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0007	1147	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0008	1147	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0009	1147	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0010	1147	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	t0011	1147	1	0	0	0	0	1	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/1	t0012	1147	1	0	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALS2CL_chr3_46663995_46698679	0/0	t0001	2052	101	4	27	57	5	8	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	1/0	t0002	2052	89	27	14	38	1	8	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/1	t0003	2052	65	5	14	30	2	13	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0004	2052	29	4	2	18	0	5	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0005	2052	19	19	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0006	2052	13	2	6	1	4	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0007	2052	8	0	3	2	2	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0008	2052	7	2	1	4	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0009	2052	6	4	2	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0010	2052	5	3	2	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0011	2052	4	4	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0012	2052	4	0	0	4	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0013	2052	3	0	0	1	1	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0014	2052	3	0	0	3	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0015	2052	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0016	2052	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0017	2052	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0018	2052	2	1	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0019	2052	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0020	2052	2	0	0	2	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0021	2052	2	2	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0022	2052	2	0	0	1	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0023	2052	2	1	1	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0024	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0025	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0026	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0027	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0028	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679