JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8B_chr15_34520095_34588651	0/0	t0022	3796	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0023	3796	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0024	3796	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0025	3796	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0026	3796	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0027	3796	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0028	3796	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0029	3796	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	1/0	t0030	3796	1	0	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0031	3796	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0032	3796	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0033	3796	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0034	3796	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0035	3796	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	t0036	3796	1	0	0	0	1	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8F_chr15_28373664_28397021	0/0	t0001	3057	72	2	23	22	12	13	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0002	3057	52	5	5	31	1	10	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0003	3061	27	0	3	22	0	2	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0004	3061	23	0	1	22	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0005	3057	12	6	4	0	1	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0006	3057	10	0	0	10	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0007	3057	9	9	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0008	3057	4	2	0	1	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0009	3057	4	3	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0010	3057	3	3	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0011	3057	3	0	1	0	0	2	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0012	3057	2	0	2	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0013	3061	2	0	0	2	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0014	3057	2	1	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0015	3057	2	1	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0016	3061	2	0	0	2	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0017	3061	2	0	0	2	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0018	3057	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0019	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0020	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0021	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0022	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0023	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0024	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0025	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0026	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0027	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0028	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0029	3057	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0030	3057	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0031	3057	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0032	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0033	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0034	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0035	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021