JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8F_chr15_28373664_28397021	0/0	t0036	3057	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0037	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0038	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0039	3057	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0040	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0041	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0042	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0043	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0044	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0045	3057	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0046	3057	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0047	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0048	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0049	3057	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0050	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0051	3057	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0052	3057	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0053	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0054	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0055	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	t0056	3061	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8G_chr15_28514611_28537971	0/0	t0001	3025	37	7	13	5	8	4	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0002	3025	34	1	15	2	6	10	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0003	3025	4	4	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0004	3029	4	0	0	2	0	2	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0005	1939	4	4	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0006	3025	2	1	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0007	3025	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0008	3025	2	0	1	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0009	3025	1	0	0	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0010	3025	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0011	3025	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0012	3025	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0013	3025	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0014	3025	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0015	3025	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0016	3025	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0017	3025	1	0	0	1	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0018	3025	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	t0019	1939	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8H_chr15_30599028_30622752	0/0	t0001	3290	191	21	41	100	5	24	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0002	3290	45	17	9	16	0	3	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0003	3290	40	18	8	6	2	6	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0004	3290	15	0	5	1	2	7	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0005	3290	9	0	0	9	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0006	3290	9	7	0	0	2	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0007	3290	9	8	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0008	3290	7	3	4	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0009	3290	7	1	2	2	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0010	3290	5	0	5	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752