JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8H_chr15_30599028_30622752	0/0	t0011	3290	4	0	0	3	1	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0012	3290	3	3	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0013	3290	3	3	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0014	3290	3	0	2	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0015	3290	2	1	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0016	3290	2	0	0	2	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0017	3290	2	0	0	2	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0018	3290	2	0	0	0	2	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0019	3290	2	0	1	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/1	t0020	3290	2	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0021	3290	2	2	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0022	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0023	3290	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0024	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0025	3290	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0026	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0027	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0028	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0029	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0030	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0031	3290	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0032	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0033	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0034	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0035	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0036	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0037	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0038	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0039	3290	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0040	3290	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0041	3290	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0042	3290	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0043	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	t0044	3290	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8J_chr15_30077955_30101690	0/0	t0001	3290	159	3	42	86	10	18	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0002	3290	43	29	10	3	1	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0003	3288	29	3	3	13	0	10	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0004	3290	14	0	5	2	1	6	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0005	3290	11	10	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0006	3291	9	0	1	8	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0007	3290	9	0	0	9	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0008	3290	5	0	0	5	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0009	3286	4	4	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0010	3290	4	0	0	4	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0011	3290	4	0	0	3	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0012	3290	3	3	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0013	3290	3	0	0	0	0	3	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0014	3290	3	3	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0015	3290	3	0	0	3	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	t0016	3290	3	0	3	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690