JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8K_chr15_32384599_32408292	0/0	t0020	3283	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0021	3283	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0022	3283	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0023	3283	2	1	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0024	3283	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0025	3283	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0026	3283	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0027	3283	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0028	3282	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0029	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0030	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0031	3282	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0032	3283	1	0	0	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0033	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0034	3283	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0035	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0036	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0037	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0038	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0039	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0040	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0041	3283	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0042	3283	1	0	0	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0043	3283	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0044	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0045	3283	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0046	3283	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0047	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0048	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0049	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0050	3283	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0051	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0052	3283	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0053	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0054	3285	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0055	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0056	3272	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0057	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	t0058	3283	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8M_chr15_28693583_28717421	0/1	t0001	3470	180	23	39	71	15	31	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0002	3470	118	0	16	98	0	4	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0003	3464	21	7	9	5	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0004	3470	10	0	0	10	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0005	3471	10	9	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0006	3471	7	7	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0007	3464	5	5	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0008	3470	5	0	0	5	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0009	3470	5	5	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0010	3470	4	0	0	4	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0011	3464	4	2	1	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421