JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8M_chr15_28693583_28717421	0/0	t0062	3471	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	t0063	3464	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8N_chr15_32588456_32612237	0/0	t0001	3358	51	5	4	29	3	10	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0002	3358	47	6	9	26	2	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0003	3358	46	10	12	17	3	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0004	3358	23	8	5	4	2	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0005	3356	12	12	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0006	3358	10	0	8	0	0	2	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0007	3357	10	0	5	0	1	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0008	3358	9	0	1	5	1	2	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0009	3358	5	4	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0010	3358	5	3	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0011	3358	3	2	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0012	3358	3	1	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0013	3359	3	1	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0014	3358	3	1	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0015	3357	3	1	1	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0016	3358	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0017	3358	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0018	3358	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0019	3358	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0020	3358	2	1	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0021	3358	2	0	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0022	3365	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0023	3357	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0024	3358	2	1	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0025	3356	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0026	3358	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0027	3363	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0028	3358	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0029	3359	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0030	3358	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0031	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0032	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0033	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0034	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0035	3356	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0036	3359	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0037	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0038	3358	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0039	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0040	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0041	3358	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0042	3358	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0043	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0044	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0045	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0046	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0047	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0048	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237