JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8N_chr15_32588456_32612237	0/0	t0049	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0050	3357	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0051	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0052	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0053	3358	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0054	3358	1	0	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0055	3358	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0056	3357	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	t0057	3356	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8O_chr15_32436914_32460634	0/0	t0001	3291	37	2	8	19	3	5	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0002	3291	21	3	4	9	2	3	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0003	3291	20	0	8	7	1	4	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0004	3291	16	0	3	7	1	5	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0005	3291	12	6	2	1	1	2	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0006	3291	8	1	1	6	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0007	3291	8	5	1	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0008	3291	7	0	4	3	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0009	3291	7	7	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0010	3291	5	0	1	3	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0011	3291	4	0	2	1	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0012	3291	4	4	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0013	3291	4	0	3	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0014	3291	3	0	0	3	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0015	3291	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0016	3291	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0017	3291	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0018	3291	3	3	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0019	3291	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0020	3286	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0021	3291	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0022	3288	2	0	1	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0023	3291	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0024	3291	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0025	3291	2	0	1	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0026	3291	2	2	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0027	3291	2	0	0	2	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0028	3291	2	0	0	0	0	2	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0029	3291	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0030	3291	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0031	3286	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0032	3291	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0033	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0034	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0035	3291	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0036	3291	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0037	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0038	3291	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0039	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0040	3291	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0041	3291	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634