JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8O_chr15_32436914_32460634	0/0	t0042	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0043	3291	1	0	0	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0044	3291	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0045	3286	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0046	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0047	3292	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0048	3291	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0049	3291	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0050	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0051	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0052	3291	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0053	3292	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	t0054	3291	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8Q_chr15_30547050_30570684	0/0	t0001	3212	83	3	19	56	0	5	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0002	3213	7	7	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0003	3213	6	6	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0004	3212	5	4	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0005	3213	5	1	2	2	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0006	3212	3	2	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0007	3212	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0008	3212	2	0	0	2	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0009	3213	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0010	3212	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0011	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0012	3212	1	1	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0013	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0014	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0015	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0016	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0017	3212	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0018	3212	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0019	3212	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	t0020	3212	1	0	0	0	0	1	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8R_chr15_30395562_30419260	0/0	t0001	3283	81	1	13	59	2	6	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0002	3277	17	3	5	9	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0003	3283	6	2	1	1	1	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0004	3283	5	1	2	1	0	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0005	3283	5	4	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0006	3283	5	4	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0007	3282	4	4	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0008	3282	4	3	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0009	3277	4	0	0	4	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0010	3277	3	1	0	0	0	2	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0011	3277	3	3	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0012	3283	3	2	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0013	3277	3	2	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0014	3283	3	2	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0015	3277	2	1	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0016	3283	2	0	0	0	1	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0017	3277	2	0	1	0	0	1	copy fasta	GOLGA8R	chr15	30395562	30419260