JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8R_chr15_30395562_30419260	0/0	t0018	3277	2	2	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0019	3277	1	0	0	0	0	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0020	3277	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0021	3283	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0022	3277	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0023	3277	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0024	3277	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0025	3277	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0026	3277	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0027	3277	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0028	3277	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0029	3283	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0030	3278	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0031	3283	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0032	3277	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0033	3283	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0034	3283	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0035	3283	1	0	0	0	0	1	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0036	3283	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0037	3283	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0038	3283	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0039	3283	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0040	3283	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0041	3283	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0042	3282	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0043	3282	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0044	3277	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0045	3282	1	1	0	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0046	3277	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0047	3277	1	0	0	1	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8R_chr15_30395562_30419260	0/0	t0048	3283	1	0	1	0	0	0	copy fasta	GOLGA8R	chr15	30395562	30419260
GOLGA8S_chr15_23349748_23373341	0/0	t0001	3270	281	28	35	177	8	33	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/1	t0002	3270	31	13	8	1	4	4	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0003	3270	25	14	9	0	2	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	1/0	t0004	3270	16	14	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0005	3270	14	0	0	14	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0006	3270	13	2	2	4	4	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0007	3270	7	0	7	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0008	3270	7	0	7	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0009	3270	5	5	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0010	3270	4	3	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0011	3270	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0012	3270	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0013	3270	2	0	0	1	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0014	3270	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0015	3270	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0016	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0017	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0018	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0019	3270	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341