JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8S_chr15_23349748_23373341	0/0	t0020	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0021	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0022	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0023	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0024	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0025	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0026	3270	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0027	3270	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0028	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0029	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0030	3270	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0031	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	t0032	3270	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8T_chr15_30130051_30153748	0/0	t0001	3280	164	3	37	98	9	17	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0002	3280	16	6	3	4	1	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0003	3280	16	0	0	16	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/1	t0004	3280	15	0	3	7	0	4	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0005	3282	10	1	1	5	0	3	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0006	3282	6	0	0	6	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0007	3282	6	0	2	0	0	4	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0008	3282	6	6	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0009	3280	6	4	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0010	3280	4	0	0	3	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0011	3280	3	0	0	3	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0012	3282	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0013	3282	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0014	3281	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0015	3280	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0016	3281	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0017	3280	2	1	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0018	3281	2	0	0	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0019	3280	2	0	0	2	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0020	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0021	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0022	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0023	3282	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0024	3282	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0025	3281	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0026	3281	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0027	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0028	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0029	3281	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0030	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0031	3280	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0032	3280	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0033	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0034	3280	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0035	3280	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0036	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0037	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748