JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLGA8T_chr15_30130051_30153748	0/0	t0038	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0039	3280	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0040	3280	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0041	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	t0042	3282	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGB1_chr3_121658201_121754741	1/1	t0001	1392	147	48	35	37	8	17	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0002	1392	99	11	18	56	6	8	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0003	1391	74	10	14	44	0	6	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0004	1392	43	19	3	14	0	7	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0005	1392	3	0	0	3	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0006	1391	2	2	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0007	1392	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	t0008	1392	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLIM4_chr3_168003689_168100924	0/0	t0001	2234	49	6	14	16	5	8	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0002	2223	22	17	2	1	1	1	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/1	t0003	2234	20	1	7	4	0	7	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0004	2231	20	0	9	3	5	3	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0005	2226	14	11	0	1	0	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0006	2223	10	0	4	6	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0007	2223	9	8	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0008	2224	9	6	1	2	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0009	2233	7	0	2	2	1	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0010	2235	6	0	2	1	2	1	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0011	2235	6	2	2	0	0	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0012	2223	5	5	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0013	2227	5	0	1	4	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0014	2226	4	3	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0015	2232	4	0	2	0	0	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0016	2224	3	3	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0017	2225	3	2	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0018	2224	2	2	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0019	2224	2	2	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0020	2223	2	2	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0021	2223	2	2	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0022	2224	2	2	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0023	2220	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0024	2223	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0025	2227	1	0	0	1	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0026	2220	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0027	2224	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0028	2236	1	0	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	1/0	t0029	2220	1	0	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0030	2227	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0031	2230	1	0	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0032	2231	1	0	0	1	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0033	2234	1	0	0	0	0	1	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0034	2231	1	0	0	0	0	1	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0035	2236	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0036	2234	1	0	0	1	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0037	2223	1	0	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924