JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLIM4_chr3_168003689_168100924	0/0	t0038	2223	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0039	2223	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0040	2224	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0041	2223	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0042	2234	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0043	2235	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	t0044	2234	1	0	0	1	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLM1_chr9_86021146_86104558	1/0	t0001	1841	106	18	32	19	12	24	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/1	t0002	1841	94	27	15	42	0	9	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0003	1845	43	0	4	33	0	6	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0004	1841	17	17	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0005	1845	11	0	0	11	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0006	1841	6	5	1	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0007	1841	5	0	0	5	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0008	1841	4	2	2	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0009	1850	4	0	0	4	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0010	1844	3	3	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0011	1841	3	3	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0012	1841	3	3	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0013	1841	2	1	1	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0014	1841	2	2	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0015	1841	2	2	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0016	1841	1	0	0	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0017	1841	1	0	0	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0018	1850	1	0	0	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0019	1826	1	0	0	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0020	1841	1	1	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0021	1841	1	1	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0022	1841	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0023	1841	1	1	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	t0024	1841	1	0	1	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM2_chr15_44283719_44420758	1/1	t0001	2664	103	34	14	40	5	8	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0002	2664	17	6	1	10	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0003	2665	12	4	3	5	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0004	2665	8	8	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0005	2665	2	2	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0006	2665	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0007	2665	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0008	2664	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0009	2664	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0010	2664	1	0	0	1	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0011	2666	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0012	2665	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	t0013	2664	1	0	0	0	1	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLPH3L_chr1_150641230_150702154	0/0	t0001	2267	112	9	29	56	8	10	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/1	t0002	2267	68	24	12	19	4	8	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0003	2267	65	25	3	30	3	4	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0004	2267	30	1	9	11	1	8	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	1/0	t0005	2267	30	29	0	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0006	2267	14	0	0	13	0	1	copy fasta	GOLPH3L	chr1	150641230	150702154