JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLPH3L_chr1_150641230_150702154	0/0	t0007	2267	7	0	0	7	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0008	2268	6	0	0	4	0	2	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0009	2268	4	0	0	4	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0010	2267	3	3	0	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0011	2267	2	2	0	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0012	2267	2	0	0	0	0	2	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0013	2268	1	0	1	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0014	2267	1	0	0	1	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0015	2267	1	0	0	0	0	1	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0016	2267	1	0	0	1	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	t0017	2267	1	1	0	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3_chr5_32119716_32179319	0/1	t0001	1782	346	82	62	161	7	33	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	1/0	t0002	1782	6	0	0	5	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0003	1782	5	0	2	0	0	3	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0004	1782	5	0	3	0	1	1	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0005	1782	2	1	1	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0006	1782	2	0	0	2	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0007	1782	2	2	0	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0008	1782	2	0	0	0	0	2	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0009	1782	2	0	0	0	0	2	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0010	1782	1	0	0	1	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0011	1782	1	0	0	0	0	1	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0012	1782	1	0	0	0	0	1	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0013	1782	1	1	0	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0014	1782	1	0	0	0	0	1	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0015	1782	1	0	0	1	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0016	1782	1	0	1	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	t0017	1782	1	0	1	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLT1A_chr1_204193163_204218988	1/1	t0001	378	376	82	70	174	11	37	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	t0002	378	32	17	6	5	1	3	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	t0003	378	3	0	3	0	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	t0004	378	1	0	1	0	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	t0005	378	1	1	0	0	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	t0006	378	1	0	0	1	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1B_chr12_21496789_21523408	0/0	t0001	2837	103	3	16	61	6	17	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0002	2837	96	4	19	52	6	15	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0003	2837	64	45	16	0	1	2	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0004	2837	35	0	2	28	0	5	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0005	2837	25	0	0	24	1	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0006	2837	17	8	2	3	1	3	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0007	2837	6	0	5	0	1	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0008	2837	6	0	0	6	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0009	2837	5	5	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0010	2837	5	0	0	5	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0011	2837	5	1	2	2	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0012	2837	5	0	0	5	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/1	t0013	2837	4	0	1	0	1	1	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0014	2837	4	4	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0015	2837	4	1	0	0	0	3	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0016	2837	4	4	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408