JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOLT1B_chr12_21496789_21523408	0/0	t0017	2837	3	3	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	1/0	t0018	2837	3	2	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0019	2837	3	3	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0020	2837	3	0	0	3	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0021	2837	3	3	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0022	2837	3	1	2	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0023	2837	2	2	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0024	2837	2	2	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0025	2837	2	0	0	2	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0026	2837	2	0	2	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0027	2837	2	0	1	0	0	1	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0028	2837	1	1	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0029	2837	1	1	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0030	2837	1	0	0	0	1	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0031	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0032	2837	1	1	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0033	2837	1	0	0	0	0	1	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0034	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0035	2837	1	0	0	0	0	1	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0036	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0037	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0038	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0039	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0040	2837	1	0	0	0	0	1	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	t0041	2837	1	0	0	1	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GON4L_chr1_155744659_155862214	0/0	t0001	1020	127	53	18	34	4	18	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	1/0	t0002	1020	54	1	18	25	2	7	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0003	1020	24	24	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0004	1020	3	2	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0005	1020	2	2	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/1	t0006	1021	2	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0007	1020	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0008	1020	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0009	1020	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0010	1021	1	0	0	0	0	1	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0011	1020	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	t0012	1020	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON7_chr14_93197894_93212065	0/1	t0001	823	400	90	76	173	16	44	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0002	823	5	0	2	0	1	2	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0003	823	3	0	0	3	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0004	823	2	2	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0005	823	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0006	823	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	t0007	823	1	0	0	0	1	0	copy fasta	GON7	chr14	93197894	93212065
GOPC_chr6_117555269_117607511	0/0	t0001	3209	126	19	27	72	2	6	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0002	3209	97	17	16	56	5	3	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/1	t0003	3209	73	10	14	33	3	12	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0004	3209	28	13	3	4	3	5	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0005	3209	18	18	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0006	3209	11	0	1	5	2	3	copy fasta	GOPC	chr6	117555269	117607511