JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOPC_chr6_117555269_117607511	0/0	t0007	3209	7	6	1	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0008	3209	4	0	0	4	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0009	3209	3	0	2	0	1	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0010	3209	2	1	0	0	0	1	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0011	3209	2	0	0	2	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0012	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0013	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0014	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	1/0	t0015	3209	1	0	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0016	3209	1	0	0	1	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0017	3209	1	0	0	1	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0018	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0019	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0020	3209	1	0	0	0	0	1	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0021	3209	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	t0022	3209	1	0	0	0	0	1	copy fasta	GOPC	chr6	117555269	117607511
GORAB_chr1_170527166_170558834	1/1	t0001	1431	145	22	33	66	8	14	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0002	1431	118	27	24	48	3	16	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0003	1431	58	20	7	18	1	12	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0004	1431	17	16	1	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0005	1431	3	0	0	3	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0006	1431	3	2	1	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0007	1431	2	0	0	2	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0008	1431	2	0	0	2	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0009	1431	2	2	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0010	1431	1	1	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0011	1431	1	1	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0012	1431	1	0	0	1	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0013	1431	1	0	0	1	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0014	1398	1	0	0	1	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	t0015	1431	1	1	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORASP1_chr3_39091599_39112627	0/1	t0001	1724	264	46	50	132	10	25	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0002	1724	61	1	6	44	4	6	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0003	1724	31	28	3	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0004	1724	14	0	4	10	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	1/0	t0005	1724	13	1	7	1	2	1	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0006	1722	11	11	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0007	1729	5	4	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0008	1724	2	2	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0009	1724	2	2	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0010	1724	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0011	1724	1	1	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0012	1724	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0013	1724	1	0	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	t0014	1724	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP2_chr2_170924253_170972130	1/1	t0001	1089	369	90	60	162	16	39	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	t0002	1089	6	0	4	0	0	2	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	t0003	1089	2	0	1	0	0	1	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	t0004	1089	2	2	0	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	t0005	1089	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130