JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GORASP2_chr2_170924253_170972130	0/0	t0006	1089	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	t0007	1089	1	0	1	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GOSR1_chr17_30472408_30532592	0/0	t0001	5228	108	22	26	46	3	11	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	1/1	t0002	5241	98	13	27	32	8	16	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0003	5228	11	11	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0004	5229	8	5	2	0	1	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0005	5241	8	2	0	5	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0006	5215	5	5	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0007	5269	5	5	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0008	5228	5	0	1	4	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0009	5229	4	4	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0010	5215	3	2	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0011	5229	3	2	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0012	5242	3	0	3	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0013	5241	3	0	0	3	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0014	5215	2	2	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0015	5228	2	2	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0016	5228	2	0	0	2	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0017	5229	2	1	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0018	5240	2	0	1	0	1	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0019	5228	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0020	5215	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0021	5215	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0022	5199	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0023	5216	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0024	5229	1	0	0	0	1	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0025	5176	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0026	5226	1	0	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0027	5226	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0028	5229	1	0	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0029	5229	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0030	5229	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0031	5228	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0032	5228	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0033	5188	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0034	5178	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0035	5228	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0036	5227	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0037	5228	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0038	5228	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0039	5228	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0040	5241	1	0	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0041	5228	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0042	5241	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0043	5241	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0044	5241	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0045	5241	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0046	5241	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0047	5240	1	0	1	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0048	5241	1	0	0	0	0	1	copy fasta	GOSR1	chr17	30472408	30532592