JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOSR1_chr17_30472408_30532592	0/0	t0049	5228	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	t0050	5229	1	1	0	0	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR2_chr17_46918160_46947020	0/0	t0001	3294	161	20	31	87	4	19	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0002	3294	86	15	7	58	1	5	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/1	t0003	3294	33	1	13	11	1	6	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0004	3295	23	0	11	12	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0005	3302	20	6	10	0	3	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	1/0	t0006	3294	15	14	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0007	3302	11	10	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0008	3293	7	7	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0009	3296	7	7	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0010	3294	5	0	3	0	0	2	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0011	3294	4	0	0	0	4	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0012	3294	3	0	0	0	0	3	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0013	3295	3	1	0	2	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0014	3294	3	0	0	3	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0015	3294	3	0	0	3	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0016	3294	2	2	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0017	3293	2	0	0	1	1	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0018	3294	2	0	0	2	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0019	3295	2	0	2	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0020	3294	2	2	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0021	3302	2	1	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0022	3294	1	0	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0023	3294	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0024	3295	1	0	0	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0025	3294	1	0	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0026	3295	1	0	0	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0027	3302	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0028	3302	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0029	3294	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0030	3295	1	0	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0031	3293	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0032	3294	1	0	0	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0033	3295	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0034	3294	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0035	3294	1	0	0	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0036	3296	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	t0037	3294	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOT1L1_chr8_37929281_37945124	1/1	t0001	108	434	90	74	210	14	44	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1_chr10_99391870_99435624	1/1	t0001	737	301	62	62	148	8	19	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0002	737	27	7	2	14	0	4	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0003	737	14	14	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0004	737	4	3	0	0	0	1	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0005	737	4	4	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0006	737	2	0	0	2	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0007	737	1	1	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	t0008	737	1	1	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT2_chr16_58702131_58739316	1/1	t0001	1129	213	25	30	136	4	16	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0002	1129	128	34	23	43	7	21	copy fasta	GOT2	chr16	58702131	58739316