JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GOT2_chr16_58702131_58739316	0/0	t0003	1129	25	23	2	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0004	1129	8	0	6	0	0	2	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0005	1129	8	8	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0006	1129	4	0	3	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0007	1129	2	0	1	0	1	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0008	1129	2	0	2	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0009	1129	2	0	0	2	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0010	1129	1	0	0	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0011	1129	1	0	0	0	0	1	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0012	1129	1	0	1	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0013	1129	1	0	0	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0014	1129	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0015	1129	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0016	1129	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	t0017	1129	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GP1BA_chr17_4927277_4940023	0/0	t0001	557	316	68	63	133	11	41	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/1	t0002	557	91	20	10	54	3	3	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	t0003	557	12	0	0	12	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	t0004	557	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	t0005	557	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	1/0	t0006	556	1	0	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	t0007	557	1	0	1	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	t0008	557	1	0	0	1	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BB_chr22_19718539_19729771	1/0	t0001	339	205	33	48	86	15	22	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/1	t0002	339	199	59	34	81	3	21	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	t0003	339	2	0	0	2	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	t0004	339	1	0	0	1	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	t0005	339	1	0	0	0	0	1	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	t0006	324	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	t0007	339	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP2_chr16_20304574_20332513	0/0	t0001	1735	103	0	11	80	0	12	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0002	1734	89	10	20	31	10	18	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/1	t0003	1733	80	34	23	8	6	8	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	1/0	t0004	1733	48	1	13	31	0	2	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0005	1733	13	6	3	0	2	2	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0006	1739	10	10	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0007	1739	9	7	2	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0008	1733	8	5	2	0	0	1	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0009	1733	7	7	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0010	1733	5	0	2	3	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0011	1733	3	0	0	2	0	1	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0012	1739	3	2	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0013	1733	2	2	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0014	1734	2	0	0	2	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0015	1734	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0016	1734	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0017	1735	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0018	1734	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0019	1734	1	0	0	0	0	1	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0020	1734	1	0	0	0	0	1	copy fasta	GP2	chr16	20304574	20332513