JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GP2_chr16_20304574_20332513	0/0	t0021	1733	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0022	1739	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0023	1734	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	t0024	1733	1	0	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP5_chr3_194389821_194404266	1/1	t0001	1811	274	45	51	138	3	35	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0002	1811	35	9	3	22	0	1	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0003	1811	18	13	3	0	1	1	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0004	1811	16	1	0	15	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0005	1811	10	10	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0006	1811	9	7	2	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0007	1811	6	6	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0008	1811	3	0	0	3	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0009	1811	2	2	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0010	1811	1	0	0	1	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0011	1811	1	0	1	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0012	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0013	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0014	1811	1	0	0	0	0	1	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0015	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0016	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0017	1811	1	0	0	1	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0018	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0019	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	t0020	1811	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP6_chr19_55008705_55043264	0/1	t0001	406	295	44	56	147	15	32	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0002	406	64	36	13	4	3	8	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0003	406	64	12	9	39	0	4	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0004	406	4	2	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0005	406	4	1	2	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0006	406	3	2	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0007	406	3	0	0	0	0	3	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0008	406	2	1	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0009	406	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	t0010	406	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP9_chr3_129055779_129067406	1/1	t0001	344	375	71	76	172	12	42	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	t0002	344	13	12	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	t0003	344	2	1	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	t0004	344	2	2	0	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GPA33_chr1_167047836_167095377	0/0	t0001	1590	125	9	37	55	5	19	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	1/0	t0002	1589	87	28	8	42	0	8	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/1	t0003	1589	79	23	18	28	3	6	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0004	1590	18	3	1	11	1	2	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0005	1589	18	3	6	0	3	6	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0006	1589	12	10	0	0	2	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0007	1589	6	6	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0008	1589	3	2	1	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0009	1589	3	3	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0010	1589	3	3	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0011	1590	2	0	0	1	0	1	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0012	1589	2	0	2	0	0	0	copy fasta	GPA33	chr1	167047836	167095377