Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALX4_chr11_44255440_44315139	0/0	t0011	4488	7	7	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0012	4492	5	0	3	2	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0013	4492	4	3	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0014	4489	4	0	3	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0015	4492	3	3	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0016	4492	3	3	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0017	4492	3	0	2	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0018	4492	3	0	0	3	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0019	4489	3	1	0	0	1	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0020	4492	3	2	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	1/0	t0021	4492	2	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0022	4492	2	0	0	2	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0023	4492	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0024	4492	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0025	4492	2	1	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0026	4492	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0027	4489	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0028	4489	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0029	4489	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0030	4489	2	1	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0031	4492	2	0	2	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0032	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0033	4488	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0034	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0035	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0036	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0037	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0038	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0039	4492	1	0	0	0	1	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0040	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0041	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0042	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0043	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0044	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0045	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0046	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0047	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0048	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0049	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0050	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0051	4492	1	0	0	0	1	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0052	4489	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0053	4489	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0054	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0055	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0056	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0057	4492	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0058	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0059	4492	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0060	4492	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139