JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPA33_chr1_167047836_167095377	0/0	t0013	1589	2	0	1	0	1	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0014	1589	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0015	1589	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0016	1589	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0017	1590	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0018	1589	1	0	0	1	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0019	1589	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0020	1589	1	0	0	0	1	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0021	1589	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0022	1589	1	0	0	1	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	t0023	1589	1	0	0	1	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPAA1_chr8_144077634_144091216	1/1	t0001	189	293	60	65	114	15	37	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	t0002	187	45	36	7	0	1	1	copy fasta	GPAA1	chr8	144077634	144091216
GPALPP1_chr13_44984538_45035305	0/0	t0001	2420	122	11	28	60	6	17	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0002	2420	47	22	9	3	2	11	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0003	2420	37	0	1	35	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0004	2415	28	15	10	3	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0005	2420	25	0	0	24	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0006	2416	20	0	0	20	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	1/0	t0007	2420	16	12	3	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0008	2420	8	7	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0009	2420	8	8	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0010	2420	7	4	3	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0011	2420	3	0	0	3	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0012	2420	3	0	2	0	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0013	2415	3	0	0	3	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0014	2420	2	2	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0015	2420	2	2	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0016	2420	2	2	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0017	2420	2	0	1	0	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0018	2422	2	1	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0019	2420	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0020	2421	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0021	2420	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0022	2420	1	0	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0023	2420	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0024	2420	1	0	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0025	2420	1	1	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0026	2420	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0027	2415	1	0	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	t0028	2415	1	1	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/1	t0029	2422	1	0	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPAM_chr10_112144865_112188765	0/1	t0001	3886	109	26	18	48	8	8	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	1/0	t0002	3886	84	6	21	41	5	10	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0003	3886	63	4	12	34	2	11	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0004	3885	51	3	5	36	1	6	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0005	3885	9	8	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0006	3886	7	0	6	0	1	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0007	3886	6	0	6	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0008	3885	5	5	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765