JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPAM_chr10_112144865_112188765	0/0	t0009	3886	3	3	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0010	3886	3	2	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0011	3886	3	0	0	3	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0012	3886	2	0	2	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0013	3886	2	2	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0014	3886	2	0	0	2	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0015	3886	2	0	2	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0016	3885	2	0	0	0	0	2	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0017	3886	2	2	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0018	3885	2	0	2	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0019	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0020	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0021	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0022	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0023	3886	1	0	0	0	1	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0024	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0025	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0026	3886	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0027	3886	1	0	0	0	0	1	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0028	3885	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0029	3885	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0030	3885	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0031	3886	1	0	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0032	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0033	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0034	3886	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0035	3886	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0036	3886	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0037	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0038	3886	1	0	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	t0039	3886	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPANK1_chr6_31656228_31669997	0/0	t0001	1295	170	33	23	84	10	20	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0002	1300	71	7	19	41	1	3	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0003	1300	39	18	5	5	3	8	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/1	t0004	1295	30	0	12	12	1	4	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0005	1300	26	12	4	9	1	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0006	1300	21	5	2	13	0	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0007	1295	21	0	5	12	1	3	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0008	1300	17	10	1	6	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0009	1300	8	2	1	4	0	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0010	1295	7	1	3	1	1	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0011	1300	4	0	0	1	0	3	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0012	1295	4	0	0	3	0	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0013	1300	3	0	0	3	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0014	1300	3	0	0	3	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0015	1294	3	0	3	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0016	1300	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0017	1300	1	1	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0018	1299	1	1	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0019	1300	1	1	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997