JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPANK1_chr6_31656228_31669997	0/0	t0020	1295	1	0	0	0	0	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	t0021	1300	1	1	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPAT2_chr2_96016946_96039916	0/1	t0001	338	252	63	53	119	7	9	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	1/0	t0002	338	167	33	22	72	5	34	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	t0003	338	1	0	0	1	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	t0004	338	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	t0005	338	1	0	0	0	0	1	copy fasta	GPAT2	chr2	96016946	96039916
GPAT3_chr4_83531108_83610875	1/1	t0001	1624	107	14	15	60	2	14	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0002	1624	97	29	12	46	4	6	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0003	1624	75	5	18	30	5	17	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0004	1624	19	16	3	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0005	1624	17	16	0	0	1	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0006	1624	4	4	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0007	1624	3	3	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0008	1621	3	0	0	3	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0009	1624	2	2	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0010	1624	2	0	2	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0011	1623	1	0	0	0	0	1	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0012	1624	1	1	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0013	1624	1	0	0	1	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0014	1624	1	1	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	t0015	1624	1	1	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT4_chr8_41573200_41630001	1/0	t0001	4928	150	23	24	74	5	23	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/1	t0002	4937	55	1	11	32	3	7	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0003	4936	51	4	11	29	1	6	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0004	4937	32	12	1	19	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0005	4936	28	11	1	12	1	3	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0006	4937	13	6	5	0	0	2	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0007	4939	12	5	6	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0008	4937	8	8	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0009	4937	5	0	0	5	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0010	4936	3	3	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0011	4928	3	0	0	3	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0012	4937	2	2	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0013	4936	2	0	0	2	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0014	4937	2	2	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0015	4937	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0016	4936	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0017	4930	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0018	4937	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0019	4937	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0020	4939	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0021	4936	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0022	4936	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0023	4937	1	0	1	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0024	4937	1	0	1	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0025	4937	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0026	4937	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0027	4937	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0028	4936	1	0	0	0	1	0	copy fasta	GPAT4	chr8	41573200	41630001