JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPAT4_chr8_41573200_41630001	0/0	t0029	4937	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0030	4937	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0031	4937	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0032	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0033	4928	1	0	1	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0034	4928	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0035	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0036	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0037	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0038	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0039	4937	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0040	4932	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0041	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0042	4927	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0043	4928	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0044	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0045	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0046	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0047	4928	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0048	4928	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0049	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0050	4928	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0051	4935	1	0	1	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0052	4939	1	0	0	0	1	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0053	4939	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0054	4928	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0055	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0056	4932	1	1	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0057	4932	1	0	1	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	t0058	4928	1	0	0	1	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPATCH11_chr2_37079518_37104244	0/0	t0001	3049	76	8	16	47	0	5	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0002	3049	47	4	2	36	1	4	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0003	3049	41	6	0	30	1	4	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/1	t0004	3047	34	1	12	13	4	3	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0005	3047	27	1	5	15	0	6	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0006	3047	26	4	6	14	1	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0007	3047	21	1	2	18	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0008	3049	18	0	3	12	2	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0009	3047	17	1	6	2	2	6	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	1/0	t0010	3048	8	7	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0011	3051	6	4	1	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0012	3047	6	1	4	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0013	3047	5	0	2	1	0	2	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0014	3047	5	5	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0015	3048	5	5	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0016	3047	4	0	2	0	1	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0017	3049	4	0	0	4	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0018	3047	4	3	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0019	3049	4	0	1	0	2	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0020	3063	4	4	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244