JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPATCH11_chr2_37079518_37104244	0/0	t0021	3051	3	1	0	1	0	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0022	3049	3	1	1	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0023	3046	3	2	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0024	3048	3	3	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0025	3053	3	3	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0026	3049	3	3	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0027	3049	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0028	3046	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0029	3047	2	0	2	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0030	3047	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0031	3049	2	1	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0032	3047	2	0	0	2	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0033	3046	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0034	3046	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0035	3046	2	0	0	0	1	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0036	3048	2	0	2	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0037	3049	2	0	1	0	1	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0038	3049	2	0	1	0	0	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0039	3049	2	0	0	0	0	2	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0040	3063	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0041	3047	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0042	3049	1	0	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0043	3047	1	0	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0044	3047	1	0	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0045	3047	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0046	3046	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0047	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0048	3047	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0049	3047	1	0	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0050	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0051	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0052	3049	1	0	0	0	0	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0053	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0054	3049	1	0	0	0	0	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0055	3047	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0056	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0057	3047	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0058	3049	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0059	3046	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0060	3046	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0061	3048	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0062	3046	1	0	0	0	0	1	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0063	3046	1	0	0	0	1	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0064	3051	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0065	3049	1	0	0	0	1	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	t0066	3051	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH1_chr19_33076181_33135542	1/1	t0001	396	254	61	47	101	14	29	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	t0002	396	117	28	13	63	2	11	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	t0003	396	5	5	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	t0004	396	2	0	0	2	0	0	copy fasta	GPATCH1	chr19	33076181	33135542