JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPATCH1_chr19_33076181_33135542	0/0	t0005	396	2	2	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH2L_chr14_76146922_76219343	0/1	t0001	12575	89	2	16	52	2	16	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0002	12571	51	3	10	35	2	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0003	12571	34	0	0	29	0	5	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0004	12572	24	3	7	12	0	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0005	12584	15	0	4	11	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0006	12584	14	7	1	5	0	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0007	12584	8	0	5	0	1	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0008	12571	8	0	0	8	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0009	12571	8	0	6	0	0	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0010	12572	8	0	0	8	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0011	12562	7	7	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0012	12575	7	0	0	7	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0013	12582	6	4	1	0	0	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0014	12575	6	1	1	2	1	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0015	12586	4	3	1	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0016	12571	4	4	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0017	12572	4	3	1	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0018	12575	4	0	0	4	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0019	12588	3	3	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0020	12571	3	3	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0021	12571	3	3	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0022	12575	3	0	3	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0023	12573	3	0	1	0	2	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0024	12572	3	0	0	0	3	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0025	12572	3	3	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0026	12582	2	0	0	0	0	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0027	12580	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0028	12571	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0029	12572	2	1	1	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0030	12575	2	0	1	0	1	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0031	12575	2	0	0	0	0	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0032	12573	2	1	0	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0033	12573	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0034	12572	2	0	0	0	0	2	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0035	12572	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0036	12571	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0037	12572	2	0	0	2	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0038	12575	1	0	0	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0039	12575	1	0	1	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0040	12588	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0041	12584	1	0	0	0	0	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0042	12584	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0043	12583	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0044	12584	1	0	0	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0045	12584	1	0	0	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0046	12584	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0047	12582	1	0	0	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0048	12582	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	t0049	12580	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343