JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPATCH2_chr1_217421992_217636090	0/0	t0007	4267	9	4	4	0	1	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0008	4273	5	1	3	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0009	4269	5	5	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0010	4273	5	5	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0011	4274	4	1	1	0	1	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0012	4273	3	2	0	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0013	4273	3	0	0	3	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0014	4270	3	3	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0015	4269	3	0	1	0	0	2	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0016	4269	2	2	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0017	4273	2	0	2	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0018	4273	2	2	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0019	4273	2	0	1	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0020	4270	2	1	0	0	1	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0021	4270	2	1	0	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0022	4270	2	2	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0023	4272	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0024	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0025	4272	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0026	4273	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0027	4272	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0028	4272	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0029	4274	1	0	1	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0030	4274	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0031	4273	1	0	1	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0032	4273	1	0	1	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0033	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0034	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0035	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0036	4269	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0037	4274	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0038	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0039	4274	1	0	0	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0040	4250	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0041	4268	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0042	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0043	4269	1	1	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	t0044	4258	1	0	0	0	0	1	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH3_chr1_26885488_26905467	1/1	t0001	548	276	80	60	76	18	40	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0002	548	10	9	1	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0003	548	2	2	0	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0004	562	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0005	548	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0006	548	1	1	0	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	t0007	548	1	0	1	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH8_chr17_44390281_44508406	1/1	t0001	2324	303	72	60	129	10	30	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0002	2324	7	7	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0003	2324	2	0	1	1	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0004	2324	2	0	0	0	0	2	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0005	2324	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406