JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPATCH8_chr17_44390281_44508406	0/0	t0006	2324	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0007	2324	1	0	0	0	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0008	2324	1	0	1	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0009	2324	1	0	0	1	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0010	2324	1	0	0	1	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0011	2324	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0012	2324	1	0	0	1	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0013	2324	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0014	2324	1	0	0	1	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0015	2324	1	0	0	0	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	t0016	2324	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPBAR1_chr2_218256015_218268861	0/0	t0001	392	184	9	41	104	10	20	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/1	t0002	392	140	17	28	71	3	20	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	1/0	t0003	392	60	54	3	2	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	t0004	392	10	10	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	t0005	392	7	2	3	1	1	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	t0006	392	3	1	2	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	t0007	392	1	0	1	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	t0008	392	1	1	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBP1L1_chr1_45622304_45691533	1/0	t0001	2217	122	27	25	52	5	12	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0002	2219	86	19	16	41	4	6	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/1	t0003	2216	39	20	10	0	3	5	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0004	2220	11	0	0	11	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0005	2219	7	0	4	0	0	3	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0006	2216	6	6	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0007	2217	3	1	2	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0008	2217	3	0	3	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0009	2217	3	0	0	3	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0010	2220	2	0	0	2	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0011	2219	2	1	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0012	2217	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0013	2217	1	0	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0014	2219	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0015	2217	1	0	0	0	0	1	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0016	2219	1	0	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0017	2219	1	0	0	0	0	1	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0018	2219	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	t0019	2216	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1_chr5_57169059_57269673	0/1	t0001	3085	98	23	26	35	2	11	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0002	3085	81	33	17	18	3	10	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	1/0	t0003	3085	58	16	14	4	5	18	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0004	3085	29	13	1	14	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0005	3085	6	1	5	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0006	3085	4	0	0	4	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0007	3085	3	3	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0008	3085	2	0	1	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0009	3085	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0010	3085	1	0	0	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0011	3085	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0012	3085	1	0	0	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673