JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPBP1_chr5_57169059_57269673	0/0	t0013	3085	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0014	3085	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0015	3085	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0016	3085	1	0	0	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	t0017	3085	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPC1_chr2_240430663_240473076	1/0	t0001	2043	123	8	25	70	5	14	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0002	2043	78	30	19	17	7	5	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0003	2043	56	8	13	34	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0004	2043	31	12	5	4	3	7	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0005	2043	17	16	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/1	t0006	2043	15	3	5	4	1	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0007	2043	14	0	1	4	1	8	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0008	2043	13	9	0	1	1	2	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0009	2043	7	0	6	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0010	2043	5	0	0	5	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0011	2043	4	0	1	0	0	3	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0012	2043	4	4	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0013	2043	3	0	0	0	0	3	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0014	2043	3	2	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0015	2043	2	0	2	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0016	2043	2	2	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0017	2043	2	0	0	2	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0018	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0019	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0020	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0021	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0022	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0023	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0024	2043	1	0	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0025	2043	1	0	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0026	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0027	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0028	2043	1	0	0	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0029	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0030	2043	1	0	0	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0031	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0032	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0033	2043	1	0	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0034	2043	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0035	2043	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	t0036	2043	1	0	0	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC2_chr7_100164606_100182381	0/0	t0001	807	228	34	38	120	8	28	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	1/1	t0002	807	157	43	26	55	9	22	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0003	807	6	5	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0004	807	3	3	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0005	807	3	3	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0006	807	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0007	807	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	t0008	807	1	0	0	0	1	0	copy fasta	GPC2	chr7	100164606	100182381
GPC3_chrX_133530745_133990594	1/1	t0001	525	134	24	21	64	5	18	copy fasta	GPC3	chrX	133530745	133990594